What data are available?
The github site carries all the results of analyses (and links to raw data on our download site for large files that have been contributed). We hope receive data and analysis results from many sources. To date we have:
Hymenoscyphus fraxineus
- mRNAseq data and assemblies of primordial and mature fruiting bodies
Contributed by Diane Saunders and Kentaro Yoshida, Kamoun Group, The Sainsbury Laboratory. - sequences from Primordial fruit bodies
Contributed by Diane Saunders and Kentaro Yoshida, Kamoun Group, The Sainsbury Laboratory. - Calmodulin sequences amplified from Ash branch pith samples from Ashwellthorpe Wood, Norwich.
Contributed by Anne Edwards, JIC - ITS sequences amplified from Ash branch pith samples from Ashwellthorpe Wood, Norwich.
Contributed by Anne Edwards, JIC - Kenninghall wood (KW1) version1 and version2 genome assemblies, annotations and reads
Contributed by Diane Saunders, Kamoun Group, The Sainsbury Laboratory.
Bernardo Clavijo, David Swarbreck, Gemy Kaithakottil, Mario Caccamo
The Genome Analysis Centre, Norwich. - RNA-seq reads from 6 FERA collected samples (FERA-88, 93, 94, 105, 232 and 233
Contributed by Rachel Glover, Fera Science Ltd. (Fera), York - Genome sequencing of 23 strains of H. fraxineus from Europe.
Contributed by Georgios Koutsovoulos, Mark Blaxter
The University of Edinburgh
Adam Vivian-Smith & Ari Hietala
Skog og Landskap – Norwegian Forest and Landscape Institute
Bioforsk – Norwegian Institute for Agricultural and Environmental Research
Renaud Ioos & colleagues
Unité de Mycologie, Laboratoire de la Santé des Végétaux, Domaine de Pixérécourt, Malzéville, France - Genome sequencing of 20 UK isolates of Hymenoscyphus fraxineus
Contributed by Mark McMullan, Matt Clark, Louisa Williamson, James Lipscombe, Rachel Piddock, Fiore Cugliandolo, Fiona Fraser, Tom Barker, Mario Caccamo
The Genome Analysis Centre, Norwich.
Fraxinus excelsior
- Nornex tree35 genome assembly
Contributed by Bernardo Clavijo, Mario Caccamo
The Genome Analysis Centre, Norwich. - Ashwellthorpe1 (ATU1) RNA-seq data and assembly
Contributed by Diane Saunders, Kamoun Group, The Sainsbury Laboratory. - Tree35 RNA-seq reads, assemblies, annotation
Contributed by Martin Trick, John Innes Centre, Norwich. - Tree35 RNA-seq based gene models
Contributed by Manuel Corpas, The Genome Analysis Centre, Norwich. - ash tree diversity set data
Contributed by Richard Harrison, East Malling Research
Mixed Material and other species
- RNAseq reads – Ash branch pith multisample transcriptomes from Ashwellthorpe Wood, Norwich.
Contributed by Diane Saunders and Kentaro Yoshida, Kamoun Group, The Sainsbury Laboratory. - Genome sequencing of 9 species from the genus, Hymenoscyphus
Contributed by Christine Sambles, Karen Moore, Exeter Sequencing Service, Mick Kershaw, Chris Thornton, Murray Grant and David Studholme.
University of Exeter, Devon.
How can I download it?
The best way is via the github page we set up here. The page describes everything you need to download current data and analyses and add some more.
What about the very large files?
Some files we want to share are too big for github, we’ve put these on http://ftp-oadb.tsl.ac.uk/ website for download.