Mark McMullan, Matt Clark, Louisa Williamson, James Lipscombe, Rachel Piddock, Fiore Cugliandolo, Fiona Fraser, Tom Barker, Mario Caccamo
The Genome Analysis Centre, Norwich
Hymenoscyphus pseudoalbidus (Chalara fraxinea) were isolated from across Great Britain and sent to TGAC by the The Food and Environment Research Agency (FERA). FERA purified DNA from each isolate which was sent to TGAC, where it was QC’d, libraries constructed and finally sequenced on a HiSeq2500 (150bp) paired end run. The 20 isolates were sequenced over two lanes (20 isolates per lane) to an average of ~50x depth per isolate.
Following are the 20 isolates
and their sequence information is available at OADB github
Downstream analyses (genome assembly, phylogenies and selection analyses) have been done at TGAC (MM).
These analyses await data from European isolates sequenced in Edinburgh.